5874.Q4U8S2_from_253_to_386HLI-SNDID-SSPSPLIPHWDPQIGLIVL---------ASK-----GDLTVRIFQYID-- CONSENSUS/80% sl....tlD.sssuhlhPhaD.ssthlhl.........sGK.....GDstlhhaEh.... CONSENSUS/65% sls.h.plD.susGsLhPhYD.DoshlaL.........sGK.....GDssl+haElss.. CONSENSUS/50% Pls.ppslD.sSsGlLhPaYDsDosllYL.........uGK.....GDusIRYYElss.. 5874.Q4U8S2_from_253_to_386-KE----LNRAGEFK-ATGSMKSF-CLVPTDICDR--------TKCELG----------- CONSENSUS/80% .pts...h..hsth..s.tstpGh.shhPKpthsl.........tsEl............ CONSENSUS/65% .cpPa..lt.lspap.ospsp+Gh.shhPKpslsV........tpsElh........... CONSENSUS/50% .-pPa..lphLspap.SscPp+Gl.uhlPKRulDV........pcCEls........... 5874.Q4U8S2_from_253_to_386------------------RFLFNTDCK-----QINLTSMFIIRRN--SATTMNELYGEEY CONSENSUS/80% ..................+hhphhtt.......h.slshhVPRpp...p.FppDlaP.s. CONSENSUS/65% ..................Rhh+Lsss......hlcPluhhVPR+s...-.FQcDlaPsTh CONSENSUS/50% ..................RhaKLsss......slEPISatVPRKu...-hFQ-DLYPDTs 5874.Q4U8S2_from_253_to_386DT--ARYSVRDWEAGIEKN--------LGNLTI CONSENSUS/80% ss..sshsuppWhtG.stt........s.hhol CONSENSUS/65% usp.PuhoAp-WhsGpstt........shhhSL CONSENSUS/50% usp.PAloAcEWluGpsss........PthlSL
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |