6945.ISCW021704-PA_from_198_to_479PYSKKIING----GYEPEFDYGGYSVFSYIMANDSYMPRSMYIKMNDYMNN--------- CONSENSUS/80% phSpsh.hs....hh......shthphthlhs.pshhPpthhhphph.hhG......... CONSENSUS/65% paSpshths....hh.pth.husphphshIhsssohlP+phhhphphphhG......... CONSENSUS/50% caS+sachs....hh.sphphGush-ushIasssSaLP+slhhphssplhG......... 6945.ISCW021704-PA_from_198_to_479-------------FNYDTFSASFDGWGLEPILDKMFGPKVKGDISPGRSLWNF------- CONSENSUS/80% .............h.hphhphshp.pshp.hl.th........t................ CONSENSUS/65% .............hshshhEluhctcGhcphlpphhs..t.h.ppt.t.hh......... CONSENSUS/50% .............tshslhElGlcs-Gl-cllcphhu.puhhscpsspthhh........ 6945.ISCW021704-PA_from_198_to_479---------------------FGRRRSTRDIAVHK------------------------- CONSENSUS/80% .....................tth.t..t............................... CONSENSUS/65% .....................tph.ph.p............................... CONSENSUS/50% .....................sphsptspp..tp.......................... 6945.ISCW021704-PA_from_198_to_479--------------------------------------EVKEIDQNLHIETRNHPKP-YA CONSENSUS/80% ........................................t.ht..........pt...h CONSENSUS/65% .......................................hpphpphht...pp.pps.ps CONSENSUS/50% ......................................hhcplschhphhpppt-pP.cu 6945.ISCW021704-PA_from_198_to_479ALRVTAFNNEL--INLNFDEEMFD----TIMTSGENR------------------PMSIL CONSENSUS/80% .hhhchhst-h..hhhthsp..........h.th........................hh CONSENSUS/65% phhl+lhGp-l..tahshspthhp.....hhhphhts....................phh CONSENSUS/50% shal+lhGsEl..sahslccpplp....ptltpshps..................hpphh 6945.ISCW021704-PA_from_198_to_479RK--IVGDIKDF-QVRSFMMDGDMSMFLPTEIGLPFYLERKQP--MFMYYKNKEMKFDV- CONSENSUS/80% t..h.pshp.ph..t.hhhh..-.th.hPoshGhPhthsh.ts...hh.thphthphph. CONSENSUS/65% pt.lhpuhphph.tpthhhh..-sphhlPTshGlPlplshpss...sssthcsssphph. CONSENSUS/50% cp.LtsGhshsh.s+shhFh..-sphtlPTusGLPLplohpus...slsslcsssphcs. 6945.ISCW021704-PA_from_198_to_479---------------------------KGNEADGTIDEITTKI-----NGHFMFDHHTIE CONSENSUS/80% ........................hthphth..shshph.s.h..th..s.hhptthth. CONSENSUS/65% ......................tphphphphpsohuhphhsph..sh.ss.hhpsGlphp CONSENSUS/50% ....................t.sphphcsclpPSlulchsuph..Gl.ssthhpsGlchp 6945.ISCW021704-PA_from_198_to_479TASI--LVPFE-----KISV-GVGYDSRIAMSIP--VDIDAGMNM---VDRKFRM CONSENSUS/80% sph.....shph....phph..tt.thphph..s..pp..plhph...psp.hhh CONSENSUS/65% sphhp.tsshph....plsh.ppt.phchph.sP..ppphplhsh...pspshsh CONSENSUS/50% sslas.ssPlcsth..clsh.css.ph+lslssP..cccpclhsl...socsass
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |