29760.GSVIVG00032361001_from_80_to_229LSE--------------GTA---ENVQQGNDENGFNLCQILRVSKL-------------- CONSENSUS/80% ..h...............t............s..holsplLpt.pl.............. CONSENSUS/65% .ph..............sss....ttt...ps.sloLoplL+sspl.............. CONSENSUS/50% pst..............sss...sspss.spussVSLTcLLRsscl.............. 29760.GSVIVG00032361001_from_80_to_229-NIVD-FFK--------ELPQFIVKVGPILGNLYGP--DWEKR-------LEA-KELQAN CONSENSUS/80% .sl.p.Fhp........chtph..phhp............pht........th.pplppp CONSENSUS/65% .slhp.Fhp........+hcpah.chss..........stchp.......ppl.pcLpcp CONSENSUS/50% .ulh-.FFs........Kh++Ws.-husl.........sp-a+.......pcl.ccLc+s 29760.GSVIVG00032361001_from_80_to_229FVHLSILSK-YYKRAYLEFFSTSGSNL--DKQSSVI----------------SASGYVSD CONSENSUS/80% hsl.hhlhp.+ap.ha.tlF.t..............................t..s...p CONSENSUS/65% aslshsla+.+ap.hFpplFhpst.pt.........................pt.sp.pc CONSENSUS/50% FsVosllaK.KYcclFpclFpsPstcs..p......................csssossc 29760.GSVIVG00032361001_from_80_to_229YHRFGWLLFLALRV-HAFSR-FKDLV------TCTNGLVSILAILILH CONSENSUS/80% lhphsWhlFlhh+s.ph.....t-Ll......sshplLlsshshhhhp CONSENSUS/65% lapasWhLFlhhKs.phsth.tsDLV......sshpLLlssl-llhsp CONSENSUS/50% lacFsWsLFLssKu.chssh.scDLV......soYpLLlCsLDLlYsN
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |