6239.F25B3.1_from_575_to_871VDDVEGTAN--ELVRIDERISDITAQADVIQDKIR------------------------- CONSENSUS/80% ....p.l.t..phptlE.p.ptl-tpus.lEp.lR......................... CONSENSUS/65% hh.tptlpp..chpplEpp.cplEpcGstlEctLR......................... CONSENSUS/50% hpsspcIpc..ELpplEpcpcpLEp+GVpLE+pLR......................... 6239.F25B3.1_from_575_to_871-------ETEVGSSEEEMLTASYLELTNERNTLVHRQEYYNI-------IETIRQVT-SE CONSENSUS/80% ........ts.sp.p.pthh.phFpLlpcKp.LhRppscL.h.......h.pp.pLE.pp CONSENSUS/65% ........sspsppp--pLh.-WFpLlpcKshLlR+-sELhh.......htcp.pLE.cc CONSENSUS/50% .......psusscpcE-cLltEWFcLVp-KNsLlRREoELhl.......lt+-pcLE.-+ 6239.F25B3.1_from_575_to_871IDQLGKQINEV---P-DDFPRSDENKTAT-DKLIEQYSDAMKTKSNLVQKLFATE-DEIE CONSENSUS/80% .t.lp.ELRthhsh..-..+ottpttcE.p.lhpchlpllppRstllp.h-.pc..pt.p CONSENSUS/65% psplctELRplhsh..-tpKopp-pp+E.ptLlpcllplVppRstlVppL-pcRh.+ptE CONSENSUS/50% QucL-pELRsLhsps.EppKTcpD+pRE.cpLLpELVclV-pRspLVcsL-p-Rl.REpE 6239.F25B3.1_from_575_to_871EDSDRLK CONSENSUS/80% -Dp.htt CONSENSUS/65% EDpplpp CONSENSUS/50% EDcclcs
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |