29760.GSVIVG00027636001_from_2_to_230LAIFHKAFAHPP---------EELNSPASR--DGSRKP-KLPEETLREFLSAHPANTFSM CONSENSUS/80% LAlFp+tlspsP.........ptLpuPt.t...ss....h..t.lhptF.shts.suhsh CONSENSUS/65% LAlFpKslAcsP.........ctLpoPsst..tustt..thsttlhppFtsspP.sAhoh CONSENSUS/50% LAVFcKsVA+sP.........EELpSPsuu..suusps.ppssELlccFpuu+P.sAlol 29760.GSVIVG00027636001_from_2_to_230SFGTAAA--LAYVSPDRS-----YPTHQRLFGGFDDIYC--LFMGSL------------- CONSENSUS/80% shusuuh..lAhs..pps.......hh.R.FsshDslaC..lF.Gtl............. CONSENSUS/65% shGsuuh..LAastssps......shh.RhFsshD-IaC..lF.Gpl............. CONSENSUS/50% sLGsuus..LAYSsssps......PlhPRlFuulDDIaC..LFpGsL............. 29760.GSVIVG00027636001_from_2_to_230------------NNLCTLNRQYGL-SKGSNEAMLVIEAYRTLR--DRGPYPADQ------ CONSENSUS/80% ............pNls.LtppYGL.s+sssEshhllEAY+oLR..DRuPYsAsp...... CONSENSUS/65% ............-NlssLppQYGL.sKssNEshlVIEAYRTLR..DRGPYPADQ...... CONSENSUS/50% ............-NLusL++QYGL.oKsuNEuhlVIEAYRTLR..DRGPYPADQ...... 29760.GSVIVG00027636001_from_2_to_230----VVKDLEGSFAFVVYDSK-------AGTVFTALGSDG-GVKLFWGVAADGSVVI--- CONSENSUS/80% ....llpthtGpFuFllaDs........stslhhA.stct.tl.haWGhss-Gplsh... CONSENSUS/65% ....Vl+clpGpFAFllaDsp.......stslFsAhss-G.sVshaWGlsu-GplVh... CONSENSUS/50% ....VV+DLsGcFAFVLYDos.......suoVFsAsDuDG.uVPLYWGlsuDGsLVl... 29760.GSVIVG00027636001_from_2_to_230SDDLGVIKAGCAKSFAPFP-TGCMFHSD---------------------GGLMSFEHPMN CONSENSUS/80% uDs.phhptuCupShAPFP.tGhhatot.....................sGL.Sa-+P.p CONSENSUS/65% SDshchl+tuCu+SaAPFP.pGChFpop.....................uGLpSFEHPhs CONSENSUS/50% SDDh-llKcGCGKSaAPFP.sGCaFsSu.....................GGL+SFEHPhN 29760.GSVIVG00027636001_from_2_to_230------KMKAMPRIDSEGVMCGANFKV CONSENSUS/80% ......chpshPRhsspG.hsGssapV CONSENSUS/65% ......cl+shPRlDScG.hCGusFKV CONSENSUS/50% ......clKAlPRVDS-GplCGAsFKV
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |