5833.PFI0940c-1_from_1_to_130MNIFLHTYTLD---------------------------VPFFLKN--------------- CONSENSUS/80% ..Vhl.lYD.........................hst.h..hhlG............... CONSENSUS/65% h.VhLplYDlt.......................hsphhs.hhlG............... CONSENSUS/50% ssVpLpVYDLotu.....................hschhoshsLG............... 5833.PFI0940c-1_from_1_to_130---VRHTGIEVFGN----------EYTFSMD---------GIITCKP--------KKSSI CONSENSUS/80% ...laHoul...............Eahau............l.th...........h... CONSENSUS/65% ...laHoul...............EYhaGs..........Glhps...........sss. CONSENSUS/50% ...IaHTGlth.s..........hEYsFGut........sGItssts.......pssssh 5833.PFI0940c-1_from_1_to_130GQYCKSYEL---------SDVKLTYIQFTEILNVLG------------------KIYRPN CONSENSUS/80% hh...phh.......hG.Tp...p...htphlptht....................a.sp CONSENSUS/65% hth.tplh.......lGpTp..hs...hpchlppls...................papus CONSENSUS/50% ashpcsll.......LGpTch.hs..plccalcpLu...................casGs 5833.PFI0940c-1_from_1_to_130TYNFIYKNCNHFCDDLFELLSG-----------------------KRLFHRFMLYSRIGK CONSENSUS/80% pYpLhp+NCNpFopths............................ttlPtal.phsp.h. CONSENSUS/65% sYcLhp+NCNpFospls............................psIPpal.clsp.sh CONSENSUS/50% sYcLls+NCNHFos-lsphLhs.......................+sIPsaIs+Lsptsh 5833.PFI0940c-1_from_1_to_130LFGKFR---NVAL CONSENSUS/80% ...hh....s... CONSENSUS/65% tsshht.hhshh. CONSENSUS/50% ssPhsphhhPtht
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |