Q9VH23/292-454 HKDMQVSWEVFG--PQITFQLSGQVGG----NDYMSFGISGSD-VS-SQMIGSDVVVAYI CONSENSUS/80% t.th.htaph.t..t.lthth.st.......stahuhGhs.p.....t.M.ssphhhhh. CONSENSUS/65% stphhlpaphts..splthplpsss......ssasuhGhuss.....ttMsssssllshh CONSENSUS/50% ssshtlpWshssp.sslphplpussst....ssWlAlGFSsc.....spMssuDlllshs Q9VH23/292-454 DD---------------------------IRGYTVDYN--ITSLAPCVQVLGQNKGVCRD CONSENSUS/80% .s...........................sts.h.s....h.s.t..............t CONSENSUS/65% ps...........................spshhpshh..hsshs..............c CONSENSUS/50% sss..........................Gpsplpsta..ssupussh..........t- Q9VH23/292-454 DVVGGLDSFQLN-------TYSRKDGINT-ISFRRTLKSSDD------GDKEIFLDRSNY CONSENSUS/80% .t.sh...............ht..sshhh.h.hph.hts................ttth. CONSENSUS/65% hp.shps............psphpsshhh.hthp+plssst..............ssshp CONSENSUS/50% sppsspss...........sushssGslh.lpFpRclssscs.........hhhsssshp Q9VH23/292-454 VIWAFGP-----------LDSNNEPAFHTY--------YPKSDIVIDFNTTEP CONSENSUS/80% hhhs.G................t..thHt............t.t.hph.p... CONSENSUS/65% hlashG.............sttsthshHs...........tshphlplhpspt CONSENSUS/50% llaAtGs............ssssplshHsps.........sospplslsssss
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |