81824.JGI24127_from_44_to_213LDVFLQ-ERRLAQSYAEYQAKINWE----------------------PSKYRDMLAMSST CONSENSUS/80% ..........h...h..hh.thsh.........................tt.t.h.ths. CONSENSUS/65% hsh..p...plpthFtphhpphsls........................pptp.hhphs. CONSENSUS/50% hspsss..t-lcphFpcllpchsls.......................sccpc.Lpshss 81824.JGI24127_from_44_to_213--------SKQSQSTAQSLA---------------------------------------- CONSENSUS/80% ........pp+hphh.p........................................... CONSENSUS/65% ........pcKaphltpptp........................................ CONSENSUS/50% ........-+KWcllssppp...................................ttttp 81824.JGI24127_from_44_to_213------------------------------------------------------------ CONSENSUS/80% ............................................................ CONSENSUS/65% .ptpt....................................................... CONSENSUS/50% sppps....................................................... 81824.JGI24127_from_44_to_213---------------DSIPNL--------------------------------LGENDYT CONSENSUS/80% .............Pp.alp.l....................................t.t CONSENSUS/65% ............sPphalppl....................................p.p CONSENSUS/50% ............sPctYlccL...................................hpsp 81824.JGI24127_from_44_to_213VLAKRVSDIRVEL------GGCDMT----------YMKEFV----------------GAG CONSENSUS/80% ..hp.hppLphtL......psp.ht..........ahppFh.................pG CONSENSUS/65% .phphlpsLclsL......popshs..........WlppFlp...............tpG CONSENSUS/50% psspsLcsLcluL......Rosslu..........WVccFlp...............spG 81824.JGI24127_from_44_to_213ALDSLVPLLDRVTEYAES------------------------------------------ CONSENSUS/80% hthlhphLt.h..t.............................................. CONSENSUS/65% hshLlphLpphttphtt........................................... CONSENSUS/50% lssLlchLpphppcssp........................................... 81824.JGI24127_from_44_to_213------------------------------------------------------------ CONSENSUS/80% ............................................................ CONSENSUS/65% ............................................................ CONSENSUS/50% ............................................................ 81824.JGI24127_from_44_to_213----TGRFVQAQREMMFAIYHILDT-----------------------------GPGLVK CONSENSUS/80% .........p..h.hlhCl+slhN..............................p.Ghp. CONSENSUS/65% .........c.phthltCl+AlhNs.............................phGhph CONSENSUS/50% ......tppctpapslpCLKAlMNs.............................phGhsp 81824.JGI24127_from_44_to_213AL------------ENQQLVD-AIVRSLSTHDY--------------------RTLELIF CONSENSUS/80% hh............tp..hh...ls.sl.s.p.....................tshh.sh CONSENSUS/65% lh............sp.pslp.hlshuLsspp.....................ps+thsh CONSENSUS/50% ll............scspsls.tlupSLsspss....................cT+phll 81824.JGI24127_from_44_to_213QCL-VGFVR CONSENSUS/80% clL.shlsh CONSENSUS/65% clL.sslsh CONSENSUS/50% ELL.uAlCl
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |