4787.PITG_16492T0_from_116_to_210NIKRKIVVFETDM---------EDDMKEAV---------TDKTK----QLCN-------- CONSENSUS/80% ......hlh.s-h.........stphppps.........hphs.....tshpt....... CONSENSUS/65% h.ptpshlptsDM.........spchppcs.........hchsh....pAhcp....... CONSENSUS/50% hspscsll+suDM.........s--MQp-A.........lclAp....pAl-c....... 4787.PITG_16492T0_from_116_to_210----------FYDGVEDN----ETKIAQALKH-------------SLTFAYGPT------ CONSENSUS/80% ..........hp.pp.........thAthlKp.............phDptasss...... CONSENSUS/65% ..........hshpc.........plAphlKc.............phDppauss...... CONSENSUS/50% ..........ass-+.........-lApaIK+.............-FDc+YGss...... 4787.PITG_16492T0_from_116_to_210----------------WQVVV--SSSRELCCLPIA--DEGTHADF-TVA-KLRV------ CONSENSUS/80% ................Wpsll....GpsFus.loa..p.tthlah..hs.phth...... CONSENSUS/65% ................WHslV....GcsFGshlTH..pptpalaF.hls.phsl...... CONSENSUS/50% ................WHCIV....G+sFGSaVTH..-sssFlYF.alG.plul...... 4787.PITG_16492T0_from_116_to_210VVYRH CONSENSUS/80% lla+s CONSENSUS/65% LlaKs CONSENSUS/50% LLFKo
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |