5061.CADANGAP00002002_from_336_to_419LTVNP-NMTLE---------EFIETL--GERPEAQLKKPSMR-----TEEKTLYQRFP-- CONSENSUS/80% lphp..phpLp.........phlp.l..tpp.thphppPulp.....tttcsLYht.... CONSENSUS/65% lplss.shTLp.........cll-.L..spcschphKpPols.....sps+sLYhpss.. CONSENSUS/50% lplss.ssTLp.........-lI-pL..s-+schQlKsPSlo.....ucsKoLYhpsP.. 5061.CADANGAP00002002_from_336_to_419PQL--EEQTRANLKLKLKDL-IEDGQEIAV--------SDPAY-IIDFRFRLAFQ CONSENSUS/80% .tl..cp.o+.NLph.l.-L.htpspplhl........sD.th.s.sh.hplph. CONSENSUS/65% ssL..EctT+sNLs+sLt-L.lpcGpElsV........sDssh.shshphplpap CONSENSUS/50% PsL..EEtTRsNLsKsLp-L.lp-GpElsV........oDssh.Ppslpl+lcFs
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |