340102.Pars_0497_from_47_to_23SSAWP--KPVDVPLTSQT-----------------------LVY-----PLPAA----TE CONSENSUS/80% sssWsph..hplshh.s........................h.h......h.hh....pt CONSENSUS/65% sssWspssshplslh.ss..s..................h.hhh.tt.tshhhhh.htss CONSENSUS/50% sssWuclsssclsLtssssts..................h-hlhststpsshsthths-s 340102.Pars_0497_from_47_to_23SRTVSVS----AVHNGTHIA--------------------------FLLVWSDATEDVVT CONSENSUS/80% shth..........s.thlt..............................h.sp.t.h.. CONSENSUS/65% stsspptt.httshstphlss...........................h.htschs.h.s CONSENSUS/50% spulccss.tttsputphlss......................ttht.hshsu+suhlhs 340102.Pars_0497_from_47_to_23PGGLDVFPDAVAVQFPVSRAQLPYIC-----------------------------MGTVD CONSENSUS/80% ..ths..spthhh.h.h..s....................................tt.t CONSENSUS/65% .sphsh.scsshhphshststhshhh..............................ssst CONSENSUS/50% ssshshsu-ssslpashspsstssss.st.hh.......................huusc 340102.Pars_0497_from_47_to_23NP----------------------------------VNIIYWKAGLGAENLVAGAGYG-- CONSENSUS/80% ....................................sphhhhhsstts.tt.ss.t.t.. CONSENSUS/65% st..h.hsp..hs.......................spthhWsustssspphssssts.. CONSENSUS/50% sssshhhss.ttssht....................sssssWuuspsDssshsuuuss.. 340102.Pars_0497_from_47_to_23-------------------LNPQQREALG------------------------------- CONSENSUS/80% ...................h.....ts................................. CONSENSUS/65% ...................hshhh.cs................................. CONSENSUS/50% ...................hspahscuhs.............................t. 340102.Pars_0497_from_47_to_23---------------LQATPTSPV------------------------------------ CONSENSUS/80% .....................s.h.................................... CONSENSUS/65% ................t.h.su.l.................................... CONSENSUS/50% ..hs.h...s....sstthssGslh................................... 340102.Pars_0497_from_47_to_23-----------------------------------------ELLPASAQVVT-------D CONSENSUS/80% .......... ...........................hh..ts.s.......... CONSENSUS/65% .......... ...........................hh.psspsttss...... CONSENSUS/50% .......... ..........................phsscsupussuuht.... 340102.Pars_0497_from_47_to_23IAVYKDGKWYVILIRPLGS------------VHPLMASLAGK-SFNAAFATWDGSRGERG CONSENSUS/80% ..phtssha.l.hhR.hts...................htstt.h.hthAhasst.ttc. CONSENSUS/65% ..phpsGpWsVhhsR.Lss.................hshssspsh.huhAlassstsp+t CONSENSUS/50% ..sacsGpWoVslsRsLussp.............hssslssGpsashuFAlaDcspscRu 340102.Pars_0497_from_47_to_23GLKA CONSENSUS/80% h.hp CONSENSUS/65% tphu CONSENSUS/50% acpS
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |