LMA2_HUMAN/12- CECD----PYGSLP--------VPCDP------------------VTG-FCT-CRPGATG CONSENSUS/80% CtCp......ut............Ct....................sG..C..Cp.t..G CONSENSUS/65% CsCs......Gp..........spCs....................sG.pC..Cp.shtG CONSENSUS/50% CsCs......Gsh.........ssC-s..................toG.pCp.C+ssssG LMA2_HUMAN/12- -RKCD-----GCKHWHAREGW----------ECVFC CONSENSUS/80% ..pCp.....pCt.saht................tC CONSENSUS/65% .tpC-.....pCtsGaas...............tsC CONSENSUS/50% .pcC-.....cCpsGaauhs............sssC
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |