5807.cgd8_4140_from_14_to_68IRVGPEYQ-----------AVVPDLI---------------------------------- CONSENSUS/80% ltlG.paQ...........A.lP.h................................... CONSENSUS/65% IpVGspaQ...........AplPph................................... CONSENSUS/50% IcVGscYQ...........AcIP-hh.................................. 5807.cgd8_4140_from_14_to_68--------------------------------------VPEKKTQ-------------DK CONSENSUS/80% .......................................t.t..p.............p. CONSENSUS/65% .......................................p.pptp.............pp CONSENSUS/50% ....................................spsstpspc.............cc 5807.cgd8_4140_from_14_to_68KDT---EFGVP-----------NGTKSSSFSSS-----SSSSS----NAARSSI CONSENSUS/80% t.h...hWtP...............h.ppt........lpthh......spt.h CONSENSUS/65% cpL...lWpP.............t.lscpp........lcpal....thupsht CONSENSUS/50% -pL...lWsP.............ssls-sc........l-paL....stA+ups
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |