2850.JGI44738_from_30_to_281YMLLSSGGS---------------KCVSVDAPRHT----------TLRVDY--------- CONSENSUS/80% shhh.l.stt..............pChhp.h.tst...........h.hpa......... CONSENSUS/65% shthtlsstpp.............cChhcplppss..........hlhhpa......... CONSENSUS/50% ulpaplssssc.............cCFa-clspss..........plsssa......... 2850.JGI44738_from_30_to_281------FVPDLMVEDEEELKLETDAVNSVSETEPRTEEGLDSRFNDYQKRRMELLKKARH CONSENSUS/80% ...................t.......thth.h........................... CONSENSUS/65% ...................ps.tsst.shshhlhss........................ CONSENSUS/50% ...................pstsusshclchplpss........................ 2850.JGI44738_from_30_to_281GRKG----HDTNILMYQREEGSTFHRRGKANPTGSGKIRQQIDQRAG---------SVEF CONSENSUS/80% ........ttp...hhpt............................s.........phth CONSENSUS/65% ........psph..lhpp........................ptppG.........pash CONSENSUS/50% ........sGcl..lhpc........................psspG.........casF 2850.JGI44738_from_30_to_281RT---------------------------------------------GEVDGPVEVCVQS CONSENSUS/80% ts.................................................u.athChps CONSENSUS/65% sspps..............................................GpaphCFps CONSENSUS/50% supps..............................................GpYplCFsN 2850.JGI44738_from_30_to_281YSASRQL------------------------------PVRVALNVT-------------- CONSENSUS/80% t.t...................................h.l.hpht.............. CONSENSUS/65% phsph................................pphlphshph............. CONSENSUS/50% phsshs...............................s+pVph-lcl............. 2850.JGI44738_from_30_to_281------------SKASEEPPVIPLQ--------YADIAE--------------------- CONSENSUS/80% ............t.t..................h.t.tp..................... CONSENSUS/65% ............u.pt.t...............htshtp..................... CONSENSUS/50% ............Gscsps...............asshsc..................... 2850.JGI44738_from_30_to_281--------QLNVHMS-------------KITVDLKR--------SQEKLKNIMANAGYA- CONSENSUS/80% ...........tph...............hp.thpp........ltt.httlhpt.thh. CONSENSUS/65% ...........ppht..............lp.plpp........lpptlpplppp.pah. CONSENSUS/50% ..........tcclp.............sl-splcc........Lpcplpslpc-QsYh. 2850.JGI44738_from_30_to_281--REMEVGF------HGKSLSLSTAIRYWPM-FRMAVLIFAGFLQVRHV--VQYMK CONSENSUS/80% ..p.cctp.......hthscpsptplhhauh.hphhhhhhhshhQlhhl..+phFp CONSENSUS/65% ..+hREtph......+phs-ssspRlhhaSl.hphhlllshuhhQlhhL..+paFp CONSENSUS/50% ..RtREpct......RsssESTNsRVhaaSl.hplllllululhQlhaL..+pFFc
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |