gi|4160434/1-21 QGLAKSVCKATTEEC-IGPKKKHLDYLVHCANEPN------VSIPHLANLLIERSQNA-- CONSENSUS/80% .th..tlhpAsstc..hssptphhttlh.ho.p.........th..hhthh...htpt.. CONSENSUS/65% sshphtVpcATsp-..hssppphhpplhthTppt.......tshtthhshlhpRLpcp.. CONSENSUS/50% sshptsV++ATss-s.huP+sKalccIlpsTasp.......sshsplsssltcRLscp.. gi|4160434/1-21 -----------NWVVVYKSLITTHHLMAYGN-----ERFMQYLASSNSTFNLSSFLDKGT CONSENSUS/80% .............hhhhKsLhllchlltpGp.....phh..hhtph..l.pltph..... CONSENSUS/65% ...........tWhhlaKsLhllchLlppGs.....psltpshppt.pltsLppaph... CONSENSUS/50% .........tpsWphVaKuLlllcaLl+cGs....ccslpcspcptspIpsLucFpt... gi|4160434/1-21 VQDGGMGVPGGRMGYDMSPFIRRYAKYLNEKSLSYRAMAFDF CONSENSUS/80% ............ts.s.u..lpthsp.l.thhp..thh.... CONSENSUS/65% ..........pppupDhuh.lRphs+hLhphlppcpphtttp CONSENSUS/50% ..........cspucDpGttlRpYu+hLsp+Lp-cc+l+p-R
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |