272557.APE_1436.1_from_14_to_9RVYVD--------VREERS--------------------------------------PVP CONSENSUS/80% hlhlD.........pph.t.......................................h. CONSENSUS/65% hlllD........sREhts......................................tl. CONSENSUS/50% pllVD........sREhpu......................................pls 272557.APE_1436.1_from_14_to_9SILES-LGVQVIPKQ----------------------LPMGDYL-VSD------------ CONSENSUS/80% t.lt.ththth..p.......................L.hsDah.h.............. CONSENSUS/65% p.lp.phshph.hpt......................LpsGDal.hss............ CONSENSUS/50% ppLp.cpGlplpscs......................LslGDYl.lss............ 272557.APE_1436.1_from_14_to_9------------------------------------------------------------ CONSENSUS/80% ............................................................ CONSENSUS/65% ............................................................ CONSENSUS/50% ............................................................ 272557.APE_1436.1_from_14_to_9------------------------------------------------------------ CONSENSUS/80% ............................................................ CONSENSUS/65% ............................................................ CONSENSUS/50% ............................................................ 272557.APE_1436.1_from_14_to_9----------------SIIVERKT-SSDFAKSLFD------------------------- CONSENSUS/80% ..................hlER+p.hp-hhssh.t......................... CONSENSUS/65% ................phhlERKs.hsDhlsSlhs......................... CONSENSUS/50% ................chlVERKo.lsDLluSlpc......................... 272557.APE_1436.1_from_14_to_9---------------GRLFEQA--SRLAE--------------HYETV----FIIVEGPP CONSENSUS/80% ...............tchhtph...phtp...............h.p.....hhllEt.. CONSENSUS/65% ...............sRhhpQh..ppLpp..............thtps....hhllEs.t CONSENSUS/50% ...............GRhhcQt..pcLpc..............sac+s....llLlEupp
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |