164328.JGI76297_from_22_to_112QECSTDVSES----FIATIDNS--TYFDTCAEGV-TFN-------ITSVFDTLNFTDS-D CONSENSUS/80% ttCssst.tt.......lhsss.....s.Cts.s.th.................s....p CONSENSUS/65% ssCsssphss....h..lhsss..shss.Cssss.shs................ssts.p CONSENSUS/50% ssCoosplss....hhsLhssu..shss.Cusso.Ghs........hh..ss..Poss.p 164328.JGI76297_from_22_to_112FLAFCNSSTCLEPLHELM-S----PLDCLITY--EGAARNL-SEEVSELHDMCH CONSENSUS/80% h..hCtsssC.thltth..t.t...spC.h........h.h.tp.ht.h.s.Cs CONSENSUS/65% htshCsussChshlpsl..s.s..hs-Cphsh...t..hsh.tp.lsshhstCs CONSENSUS/50% hsshCuSouCtullsslh.uts..lPDCslsh..tsthhNl.pshlsshhspCs
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |