281310.NTHI1625_from_701_to_79SKFPA-NRRDLALVVADS-------------------------------VPAGELIAACK CONSENSUS/80% spaP..h.RDluhhlspt...............................h..ttl.phhp CONSENSUS/65% ScaPs.spRDlAhllsps...............................hsssplhphl+ CONSENSUS/50% S+FPu.lpRDlAllVccs...............................lsss-lhcsl+ 281310.NTHI1625_from_701_to_79-----QAGGE---KLVQVNLFDVY-QGVG--------------VAEGYKSLAISLTVQDN CONSENSUS/80% .....t.ttt...hlppltlhDha...................h..sppSlshtlhhps. CONSENSUS/65% .....psstp...hlpslplFDlYpt.................lttucKSlAhplhhps. CONSENSUS/50% .....psusc...lLccVpLFDVYps................tlspG+KSLAaplsapss 281310.NTHI1625_from_701_to_79EKTLEDEEINAVISAVLAEVKQRFNAELR CONSENSUS/80% pcTLp-tclpthhptlhttltpphss.lR CONSENSUS/65% c+TLs-p-lsthhppllptltpphsupLR CONSENSUS/50% -+TLTD-Elsslps+llssLpcchGApLR
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |