O60129/1-98 NKKPPYS-YSVMIAQAILSSSECMMTLSNIYSWISTHYPYYRTTKS-----GWQ------ CONSENSUS/80% ..+PshS.Y.tLIthAl.pusppplsLstIYpal.ppasaappt.t.....tWp...... CONSENSUS/65% .tKPPaS.YhsLIshAIppSPp+plTLstIYpaIhppFPaa+pstp.....uWp...... CONSENSUS/50% tpKPPYS.YsuLIuMAIpsSP-K+LTLupIYcaIpcpFPYYRcsss.....GWQ...... O60129/1-98 ----------NSIRHNLSLNKAFRKVPR-----------KSGEQGK---GMKWSIVPEFR CONSENSUS/80% ..........NSlRHNLShpcpFh+l.p.............tt.st...GpaWhlps.t. CONSENSUS/65% ..........NSIRHNLSLNcCFhKl.+...........p.spsuK...GsaWslcPtst CONSENSUS/50% ..........NSIRHNLSLN-CFlKVsR...........cssssGK...GsaWslcPssp O60129/1-98 EE-FIAKT CONSENSUS/80% ...h.ttt CONSENSUS/65% .phhppsp CONSENSUS/50% .phF-sGs
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |