FOR4_MOUSE RKPAIEPSCPMKPLYW--TRIQINDKSQDAAP---------------------------- CONSENSUS/80% .tt....p..h+.h.W..pclt...................................... CONSENSUS/65% .cp..psphphKpLpW..s+lp...................................... CONSENSUS/50% pKstscPcs+LKsLaW..cKlc...................................... FOR4_MOUSE --------TLW--------------------DSLEEPHI----RDTSEFEYLF--SKDTT CONSENSUS/80% .st.....thW.....................phptt.....ph.ht.hpthF......t CONSENSUS/65% .ssp..t.slW....................sclcpsph...ph.hsplcphF...pshp CONSENSUS/50% .Psshsp.olW....................sclc-sph..pstshcclEclF.sspsss FOR4_MOUSE QQKKK-PLSEAYE----KKNKVKKIIKLLDGKRSQT--VGILISSL--HLEMKD--IQQA CONSENSUS/80% .......htp.........pthpp.htlh..phsp...htIhhp.h..thsh.p..hh.t CONSENSUS/65% .t.pp.shpptp.....htpphpp.hpllDs+pups..hsIhlpth..phshp-..lpts CONSENSUS/50% ppssp.slscscp...htpsslppthplLDs++SQN..luIlL+sL..chshpE..lppA FOR4_MOUSE IFTVDD-SVVDLETLAALYENRA---QEDELTKIRKYYETSKEEDLKLLDKPEQ-FLHEL CONSENSUS/80% hhphs....ls.phhpth.thhP...s.pt.ptl.phptt........Ls..-p.ahhhh CONSENSUS/65% lhphcp.psls.shlcpLhphhP...sp-phpplpchppp......ppLscs-p.Flhtl CONSENSUS/50% lLcsDp.psLsp-hl-sLhchtP...ocEEtccLpchcc-.....sscLucuEp.FLhpl FOR4_MOUSE AQ-IPNFAERAQCIIFRAVFSEGITSLHRKVEIVTRASKGLLHMKSVKDILALILAFGNY CONSENSUS/80% .p.h.hh..Rhpshhhh.pattphp.lh.ph.tl.tAspplppst.hhpllthlLhhGNh CONSENSUS/65% sp.lshhtpRhpslhahtsappplpplp.plpslptAsppL+pScthpplLpllLthGNa CONSENSUS/50% sc.IsahppRlcullF+ssFccclppLpsplpslpsAscEL+sScpF+cLLcllLtlGNa FOR4_MOUSE MN----------------GGNRT--RGQADGYSLEILPKLKDVKSRDNG--MNLVDYVVK CONSENSUS/80% hN.................s..p....pu.uFplp.L.+L.phKssstp..hoLLchl.p CONSENSUS/65% MN.................sspp...upApGFcLssLt+Lh-sKsscs+..pTLLHalsp CONSENSUS/50% MN.................Gop+...usApGFcLsoLsKLsDlKosDs+..sTLLHalVc FOR4_MOUSE YYLRYYDQEAG--------------------------------------------TDKSV CONSENSUS/80% .h.pp.sph.th.....................ht........h.p...thp....phht CONSENSUS/65% hltcphsphhth.p....hht.........phshcth..th.phtpt..thc...hphts CONSENSUS/50% llcccaPchtsFts.phthlstut......plsh-plppsstphpcp..slE...hcpts FOR4_MOUSE FPLP---EP-QDFF-------LASQVKFEDLLKDLRKLKRQLEASEQQMKLVCKE----S CONSENSUS/80% h.......s.sth..h....h.tut.php.l.t.htph.pthpphhphht...t.....s CONSENSUS/65% hsh.t..ts.sphhph....hppAphch-plpp.hpphtpthpshhchhs.sspt...hs CONSENSUS/50% Lsssp.scs.Dcllpsh..ahcsAspch-sLpsptpchpppacclscYaucssps...ho FOR4_MOUSE PREYLQPFKDKLEEFFKKAKKE-------HKMEESHLENAQKSF---------------- CONSENSUS/80% .tt.ht.h.p.htta.pshpcp.......hhc.ptp.t.hht.h................ CONSENSUS/65% .ppaatphpphhppahcutc-p.......htchcpptptttphs................ CONSENSUS/50% pccFFscFscFhppFpcAscEs.......p+ctEccpcppppts................ FOR4_MOUSE ------ETTVGYFGMKPKTGEKE-----------VTPSYVFMV---------WFEFCSDF CONSENSUS/80% ......pp.hth.p.t.htt..............tp..h.h.h...........p.ht.h CONSENSUS/65% ......cphtchhphpstppp.............pp.hh.h.h..........t-htshh CONSENSUS/50% ......+cps-ppcsss+ppc.............spshpshps.........spDppush FOR4_MOUSE KT--------IWKRESKNISKER CONSENSUS/80% cp........hhtt.tpt.t... CONSENSUS/65% -s........lhpphppssphtp CONSENSUS/50% Ds........lpcclpssssppc
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |