APU_THEET/2-0 P-TALG---LQQPGIESS------RVTLNWS--LSTDNVA-------------------- CONSENSUS/80% ...s.t...hth...ttt......th.lpWp...s.................. ... CONSENSUS/65% .ssPts...lphpthsps......slplpWp...stts............... ... CONSENSUS/50% sssPss...lplssssss......olslsWs..sPsss............... ... APU_THEET/2-0 ------IYGYEIYKSLSETGPF----------------------------------VKIA CONSENSUS/80% ......hhth.................................................h CONSENSUS/65% ..htthhhtahhphtt........................................htph CONSENSUS/50% ..hsshllpYplptpstt.....................................thppl APU_THEET/2-0 TVADTV--------------------------YNYVDTD--VVNG----KVYYYKVVAVD CONSENSUS/80% .................................th.htt..L..t....t.Y.hplhsh. CONSENSUS/65% ttt.............................pphtlps..Lpss....spYphpltAhs CONSENSUS/50% ssss............................sshslss..LpPs....spYplcVpAhs APU_THEET/2-0 T--SFNR CONSENSUS/80% ....s.s CONSENSUS/65% ...tG.u CONSENSUS/50% t..sGpu
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |