167879.CPS_2223_from_171_to_27QNDDFLYRGQ-SKSWPLQTSFHR--TGYADL--VSYLD-------KEMKEFEHHINSISS CONSENSUS/80% .ttthhaRG.tst.h.hhsshhR..............................hhpthhp CONSENSUS/65% tpsphhaRGpusspatLhsolhR...........t.............ppth.hhcphhp CONSENSUS/50% scspalFRGQucssasLhPSlhRp.t........phhh.........s-pcp.ll+sFpc 167879.CPS_2223_from_171_to_27HPYN----------------------------VNNDNSLGALLN---------------- CONSENSUS/80% .h................................t.......t.............h..h CONSENSUS/65% psh.............................ths..t...ps.............hphL CONSENSUS/50% put............................tphssps...pss............a-hL 167879.CPS_2223_from_171_to_27-LAQHHGYPTP-LLDWTKSPYVAAFFAFEN-----------VLTKDGKIT CONSENSUS/80% shhQHaGhsTp.llDho.sshlAhaFAhtp................shlh CONSENSUS/65% uhhQHaGlPTR.LLDaTpsPhlAhaFAsps............t..suhlh CONSENSUS/50% AlAQHYGLPTR.LLDWTpNPLVALaFAsps.........tpppstsGsla
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |