323097.Nham_1110_from_28_to_10TPLGLARRGF---------CGRVSAIMVN-GDHLGV-----------------------S CONSENSUS/80% h.Ltth..sp..........hhl.th...t.............................. CONSENSUS/65% hsLspht.Gp.........tshltplt.ss.............................. CONSENSUS/50% hsLs-lpsGp.........pupIscls.sst............................. 323097.Nham_1110_from_28_to_10AMEIERRLLEFGIVEGVSVQILHEG--PIGRDPIAVRVNG--------------TT---- CONSENSUS/80% ......tlhthGhh.ut.lplht.t.......sh.ltht...............t..... CONSENSUS/65% ...hhp+LhphGlh.Gsplplhpps......sslhlpltt.............tp..... CONSENSUS/50% ..thhcRLtchGlssGsclpVlcpu..sht.sPlhlplss.............ss..... 323097.Nham_1110_from_28_to_10--IALRRCEAMAIIVGD CONSENSUS/80% ..hslttt.At.l.lp. CONSENSUS/65% ..lulppp.AptIhVp. CONSENSUS/50% ..luLc+stAppIhVct
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |