164328.JGI86458_from_327_to_403EVPQ---VYIGPP---------------------ADAATAYPDVQFAATVLAGFANV-EL CONSENSUS/80% clsQ...lYht..............................s...tP.ppLhuFt+l..l CONSENSUS/65% EVlQ...lYlp..............................sshspPh+pLpuFp+l.tL CONSENSUS/50% EVVQ...LYlpss...........................tuuls+Ps+cL+GFcKV.pL 164328.JGI86458_from_327_to_403E-----------------------AGGSTTVS--IGVREK------QLSFYNT------- CONSENSUS/80% t.......................sGpptplp..htlt.p......thshhs........ CONSENSUS/65% p.......................sGcsppVp..hplshp......sluhas........ CONSENSUS/50% p.......................PGEocsVs..hslssc......cLuaaD........ 164328.JGI86458_from_327_to_403-----------NTT-----SWELAKGER-------AVYI--SKNA CONSENSUS/80% ............t......thhh..Gta.......plhl..Gtss CONSENSUS/65% ...........tpt.....pahlpsGpa.......plhl..Gsuu CONSENSUS/50% ...........sst.....pallEsGsa.......clhV..GsSS
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |