NIDO_HUMAN/425 AEGSPQRVNGKVKGRIFVGSSQVPVVFENTDLHSYVVMNHGRSYTAISTIPETVGYSLLP CONSENSUS/80% s.stPtRlsGphpG.lph.....sl..tpscLpsasssscGpsaTslstlspshutthh. CONSENSUS/65% spGtPpRVsGplpGplNcs....Plshpss-LHuYlVos-GRsaTsIoslPpslGtsLh. CONSENSUS/50% AcGuPQRVoGoVoGcIN+s..psPVsF-csDLHoYVVoo-GRuYTAISsIPssLGuuLLh NIDO_HUMAN/425 LAPIGGI-IGWMFAVEQDGFK-NGFSITGGEFTRQAEVTFLGHPGKLVLKQQFSGI--DE CONSENSUS/80% lhsIhsh.hsWhFAhp.sssh.NGaploGuhas+pstlpa.sts..lplpQphpGl..s. CONSENSUS/65% lhsIhGs.lGWLFAcppsssh.NGFpLTGGhFo+psplpF.ssstplplsQpacGl..D. CONSENSUS/50% LsPIGGl.lGWLFAKEpuGul.NGFQLTGGlFTRcocVcFhsuuEpL+IcQpF-GL..Dp NIDO_HUMAN/425 HGHLTISTELE---GRVPQIPYGASVHIEPYTELYHYS-------SSVITSSSTREYTVM CONSENSUS/80% ps.hplph.l....GplPtls.ssplhl.sYpE.Yhhp.......sthlhsppoc..sl. CONSENSUS/65% cshLplchtlp...GpVPtlsssusVplsDYsE.Ypho......tsuslpossTRpaol. CONSENSUS/50% aGaLol+lslp...GcVPsVuusAoVpIcDYoE-Ysao......usullsooSTR-YTVh NIDO_HUMAN/425 EPDQDGAAPSHTHIYQWRQTITFQECAHDDARPALPSTQQLSVDSVFVLYNKEERILRYA CONSENSUS/80% .........s.oh.hphcQpIhaptC.pc..t.s..pp..lplspl.s.YsppEtsLRau CONSENSUS/65% .........s.TasYplcQsIpacpCtcc.tcss..spppL+Vs+Vhs.YNccEpsLRau CONSENSUS/50% ......uusspTauYoV-QTITF-sCp++-scss.sooppL+VS+Vau-YN--EclLRFA NIDO_HUMAN/425 LSN----SIGPVRDGSPD CONSENSUS/80% hps....plu.s.pssts CONSENSUS/65% hpN....ulGssscusss CONSENSUS/50% lsN....SIGPuc-usss
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |