309801.trd_0870_from_662_to_738VVDD-PVVTNVV--KADPTPVI-REDSSLAPG-EQVVVE--RARD-----GFSVAIRRRV CONSENSUS/80% .h........tp...ls.th.h...ssph..G.pptl.p..tG.......G.t.hhhthh CONSENSUS/65% phpp.tp.p.pc..tlsapsph.hpDssL.tG.ppplhp..pGps.....Ghpphshplh CONSENSUS/50% clss.ppsspp-..slPacspp.ppDssLspG.cp+Vlp..cGps.....Gp+phsacls 309801.trd_0870_from_662_to_738Y----------EGDRLI--DD-VTLRSTYQPSQNVTLVGPQP CONSENSUS/80% h...........sG..h.tpt.h.pp.h.tshspll.hGst. CONSENSUS/65% h...........sGp.h.pcp.hpppshppshspllthGopt CONSENSUS/50% h..........psGccl.s+chlspclhpcPlscllplGT+s
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |