Consensus terms for the GAGA_bind domain

3702.AT5G42520.1-P_from_1_to_342MDDGGH--------RENG-RHKAA----VQGQWLMQHQPSM------------KQVMSII
CONSENSUS/80%    Mppss.........+p.G.hacss....hpsphhh..h..h..c.....h...t...thh
CONSENSUS/65%    M--sut........Rp.G.hacss....h+sphuhQhhsph..-...p.hl.spt..slh
CONSENSUS/50%    MDDDGp......s.RNWG.aYEPst...sKGNLGLQLMsoh.sD+poKsLLss+s.hslh


3702.AT5G42520.1-P_from_1_to_342AERDAAI--------------QERNLAISEK-----------KAAVAERDMAFLQRDTAI
CONSENSUS/80%    hp.pssh................pp.sht.t..........................thh
CONSENSUS/65%    tptssuh..............p.Rs.ulstp.................h..th.p.tthl
CONSENSUS/50%    scpsuuh..............+cRDpulups.................hsMsahpp-uWl


3702.AT5G42520.1-P_from_1_to_342A---ERNNAIMERDSALTALQYRENSMVTAPAANMSACPPGCQISRGVKHLHHPHMHH-H
CONSENSUS/80%    t...........ppphht.h..........................t.............
CONSENSUS/65%    s..........pcpphhthl................ss.sh...h.tstt.pp.......
CONSENSUS/50%    s......t...c+-+hLssLsh..............sssshtsshscosshcphp.....


3702.AT5G42520.1-P_from_1_to_342HQqHHIPQLTENAYETREMEPNDGLPTSPPAGSTLESAKPKRGKRVNPKATTQTA--ANK
CONSENSUS/80%    ...................p..t........s...p....p+tt...tt.t..ps...ps
CONSENSUS/65%    ...............sspppp.ps..h.p.ss.stcss.scKpp...ptspt.Ks..h+s
CONSENSUS/50%    .............hpsPcpppssshslsEssuslscsspsKK++pttpss+sPKu..tKs


3702.AT5G42520.1-P_from_1_to_342RGPKNQRKVKKESEDDLNKIMFVKTTHDYTDEDSSK--HILIGSKSDWKSQEMvGLNQVV
CONSENSUS/80%    +c.pp.stsst.p...........................h.t.+s.hKs.th.slNtls
CONSENSUS/65%    +KsKctspssp.p...........................h.ct+ss+Ksh-l.sINtls
CONSENSUS/50%    KKPK+tsssPscc...................Guss....spRuKssKKol-l.lINGIs


3702.AT5G42520.1-P_from_1_to_342YDETTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMYPLPALPNKRHARVGGRKMSG
CONSENSUS/80%    hD.oshPhPhCSCTGh.pQCY+WGsGGWQSuCCTTslShYPLPh.sp+RtARluGRKMSt
CONSENSUS/65%    hD.oshPsPVCSCTGsspQCY+WGsGGWQSuCCTTslShYPLPhssp+RGARluGRKMSt
CONSENSUS/50%    hDlSslPsPVCSCTGsPQQCYRWGsGGWQSACCTToIShYPLPMSTKRRGARIuGRKMSp


3702.AT5G42520.1-P_from_1_to_342SAFNKLLSRLAAEGHHDLSNPVDLKDHWAKHGTNRYITIK
CONSENSUS/80%    uAFpKlLp+LuuEG.ashspPlDL+saWA+HGTN+alTI+
CONSENSUS/65%    GAFpKlLp+LAuEG.ashusPlDLKsaWA+HGTN+alTIR
CONSENSUS/50%    GAFKKVLEKLAuEG.YsLSNPIDLKoHWAKHGTNKFVTIR

The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:

ClassKeyResidues
alcoholoS,T
aliphaticlI,L,V
any.A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y
aromaticaF,H,W,Y
chargedcD,E,H,K,R
hydrophobichA,C,F,G,H,I,K,L,M,R,T,V,W,Y
negative-D,E
polarpC,D,E,H,K,N,Q,R,S,T
positive+H,K,R
smallsA,C,D,G,N,P,S,T,V
tinyuA,G,S
turnliketA,C,D,E,G,H,K,N,Q,R,S,T