6239.Y41C4A.5_from_20_to_147/1-128FARAMEVGD---KLTMKGKIM-----NPANM----------------------------- CONSENSUS/80% h.tsh..u.....lhl.Ghh.......tspp............................. CONSENSUS/65% lssulpsGp...plhlpGhl.......sspp............................. CONSENSUS/50% lssGLpsGp...slpIpGpls.....ssuc+............................. 6239.Y41C4A.5_from_20_to_147/1-128-----------------SYLHLY-QG------FNSVYEKSP------------------- CONSENSUS/80% .................atlsh..ts.............ts................... CONSENSUS/65% .................Fplsht.ss............ts-................... CONSENSUS/50% .................FslNLp.sG............ssD................... 6239.Y41C4A.5_from_20_to_147/1-128LSLHIR-VQYLRN-----------------------SIIYN-SWF-GSW--GGEQFS--- CONSENSUS/80% lshHhs.s+hptt........................llhN.sh.tttW..s.Eppt... CONSENSUS/65% luhHhN.PRFspp.......................hlVpN.oh.sspW..GpE-+p... CONSENSUS/50% lALHFN.PRFccs.......................slVpN.SppsGsW..GpEERp... 6239.Y41C4A.5_from_20_to_147/1-128--------------------------------------------------------QQPF CONSENSUS/80% .........................................................hsh CONSENSUS/65% ........................................................thPF CONSENSUS/50% .......................................................sshPF 6239.Y41C4A.5_from_20_to_147/1-128LSGN-YYS------ISVLKGPTYYS----------------------------------- CONSENSUS/80% ..sp..Fp......l.lhhttptap................................... CONSENSUS/65% ptGp..Fc......lhlhsppppac................................... CONSENSUS/50% ppGp.sFc......lpIhspscpF+................................... 6239.Y41C4A.5_from_20_to_147/1-128----IYM------GNLLITKYAFRNPA-NWQIGNLLGYGDWTVTSVSM CONSENSUS/80% ....lhl.ss...t.h..hpa.aRh...hptlphltl.ushplt.lth CONSENSUS/65% ....lhl.ss...pph..hpatHRhs..hpplstlplpGclplpslph CONSENSUS/50% ....VsV.NG...p+h..hcFsHRls..lpplspLplsGDlplsslph
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |