LYCM_STRGL/82- VQGIDVSHWQGS----INWSSVKSAGM--SFAYIKATEGTNYKDDRFSANYTNAYNAG-- CONSENSUS/80% ..uh.h.sap.......thst.tpssh...hhhhphhtstsahs.has.t.....phs.. CONSENSUS/65% htulslssapst....hshup.tssss...hsahcthcussYpsshautp.htttpss.. CONSENSUS/50% spGIDVucYpss....sshuchpsouA..saAFlKATEGsuYssshYStpspsssslsht LYCM_STRGL/82- -IIRGAYH----FARPNAS---SGTAQADYFASNGGGWSRDNRTLPGVLDIEHN-PSGAM CONSENSUS/80% .hhhth.p....ht.s.......st.phpaF.p.st...hp..s...hhsl-hp.s..th CONSENSUS/65% .hltth.p....huhPsst...tsssphsYFsshss.hhhphps..tshsl-tphshssh CONSENSUS/50% pll+sas+....auaPsss...susspAcYFsShsGsthacaoophssLslDtNhslsuh LYCM_STRGL/82- CYGL CONSENSUS/80% ..s. CONSENSUS/65% s.sh CONSENSUS/50% ssst
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |