Consensus terms for the H3 domain

H31_HUMAN/1-13   GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKT---DLRFQSSAV
CONSENSUS/80%    ...p..p+.p.tthhLpEI+phQ+SpcLLlp+hPFttLVRElhpp.p....DhphputAl
CONSENSUS/65%    sstppp+RhRPuphALcEIR+aQKST-LLIpKtPFpRLVREIspc.ps...DLRaQSsAl
CONSENSUS/50%    sssopp+RaRPGpsAL+EIRKYQKST-LLIRKAPFuRLVREIsQcFosh..DLRaQSsAI


H31_HUMAN/1-13   MALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
CONSENSUS/80%    .ALQEAsEAaLVthh-ss.LhshHAtRlTlhspDhQLhRRlph.ph
CONSENSUS/65%    hALQEAuEAaLVtLFEDosLhulHAKRVTlhPKDlQLARRIRGpct
CONSENSUS/50%    hALQEAAEAYLVuLFEDTNLlulHAKRVTIMPKDIQLARRIRGc+t

The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:

ClassKeyResidues
alcoholoS,T
aliphaticlI,L,V
any.A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y
aromaticaF,H,W,Y
chargedcD,E,H,K,R
hydrophobichA,C,F,G,H,I,K,L,M,R,T,V,W,Y
negative-D,E
polarpC,D,E,H,K,N,Q,R,S,T
positive+H,K,R
smallsA,C,D,G,N,P,S,T,V
tinyuA,G,S
turnliketA,C,D,E,G,H,K,N,Q,R,S,T