5834361/1-386 HFRVRLTHSLEVAQIGRTIARVLR------------------------------------ CONSENSUS/80% ....hhtHshtsh.hh..hh........................................ CONSENSUS/65% tstshhpHshpVsthsttlspth..................................... CONSENSUS/50% pspsshpHolpVuplupplucphs.................................... 5834361/1-386 ---------------LNEDLTEALCLAHDLGHPPFGHIGENILKQALK------------ CONSENSUS/80% ...................hhhhsuhhHDlsc............................ CONSENSUS/65% ................p.thhhhuulhHDlu+shh.t....................... CONSENSUS/50% ...............hcsptlhhAALLHDlG+shhsphh..................... 5834361/1-386 -------DAGGFDHNAHSLRILTH----------------------LESPYPRWSG---- CONSENSUS/80% .............p..ht..hh...................................... CONSENSUS/65% ............p+thhstthhh...........................htphhhth.. CONSENSUS/50% ..........htsHsthusphlp..........................thsphstphh. 5834361/1-386 -------------------------------------NKIDPNLIGALIDENQNIQ---- CONSENSUS/80% ...........................................h..c............. CONSENSUS/65% ...........................................htt+p.h.......... CONSENSUS/50% ..........................................slppHptt.......... 5834361/1-386 ------------------LSAVDDAFPLELTSWPSLEAQVAALSDDIAYDNHDLDDGLR CONSENSUS/80% .......................................hh..sD.ht.hh........ CONSENSUS/65% ..................................s..shhlphADthsshht.tthtth CONSENSUS/50% ..............................tpthshpspllpsADplcstpsstphppt
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |