243231.GSU0050_from_31_to_132IDLLEVHIAGFQYHEGMSA--GVFSMLKRG---GELCLRREPDNP--------------- CONSENSUS/80% hh.h...lhuhthht.........t.hp.s...p.lhl.pp.tp................ CONSENSUS/65% hsth..tlsGhphhs.........t.lp.u...phlhlpR-spN................ CONSENSUS/50% lGshphpVsGhsYtssh.......stlcsG...-tVtLpREssNs............... 243231.GSU0050_from_31_to_132----------------------------------YDPFAIAMETQA---------GNKLG CONSENSUS/80% ..................................hc.psl.h.............t..lG CONSENSUS/65% ..................................hDtsAltlhsst.........stplG CONSENSUS/50% ..................................aDssAIpVhsss.........GpclG 243231.GSU0050_from_31_to_132YLPRRINGIPAAILD-------QGVTTRAEIVEIDA---LAPPWERVLVRVWQEV CONSENSUS/80% hlspthst.h..hhc.......tt.h..tth..ht......th...hhhph.h.h CONSENSUS/65% alscchuthlssLh-.......sshhhhtthhhhst...phphtt.hhlplhs.h CONSENSUS/50% YlP+-huptlusLlD.......sspsphpslshhss...ptssspslhlplpspl
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |