586241/56-315 NRPTDPASLAVFRFLFGFLMVLDIPQERGLSSLDRKYLDGLDVCR--------FPLLDAL CONSENSUS/80% .hsh..hshuhhRhhhuhhhhh.l........hp.hh..................hhp.h CONSENSUS/65% ppssssssLulaRhhhGhhhhlsl.pph..sphshhahcsh.hs.........h.lhshh CONSENSUS/50% pRPsDsAuLAVFRllaGllhllDIhpEpuhupl-t+YtDsthhsR........aPLh-sh 586241/56-315 RPLP---------LDWMYLVYTIMFLGALGMMLGLCYRI--SCVLFLLPYWYVFLLDKTS CONSENSUS/80% t.h............hh.hhahlhhlhshhhhlGhh.Rh..sshhhhh.hh.l.hh..hs CONSENSUS/65% pshs.........h.hhhllaslhhlsuhhhhlGhphRl..sslhahl.hhhlhhhstss CONSENSUS/50% pPLs.........hsahhllYslMhluAlulhLGa+aRl..SslLFhLsaaYlaLlDpss 586241/56-315 WN---NHSYLYGLLAFQLTFM--DANHYWSVDGLLNAHRRNA------------------ CONSENSUS/80% h....sp.hhhhhhhh.hh....sttphaSl-thhp..htt................... CONSENSUS/65% hs...sp.hhhhhlhhhhh.h..sspchWSlDuhhptphpss.................. CONSENSUS/50% aN...NHsYLhuLlshlhlhh..sAs+aWSlDuhhsscp+su.................. 586241/56-315 ------------------------------------------------------------ CONSENSUS/80% ............................................................ CONSENSUS/65% ............................................................ CONSENSUS/50% ............................................................ 586241/56-315 -------------------------------HVPLWNYAVLRGQIFIVYFIAGVKKLDAD CONSENSUS/80% ...............................hls.hshhhlhhQlhhlYhhuulhKhtsp CONSENSUS/65% ...............................plshhshhllphQlhllYhhuGltKlss- CONSENSUS/50% ...............................cVPhWsaslL+sQlhllYFhAGl+KLcuD 586241/56-315 -WVEGYSMEY--LSRHWLFSPFKL-----LLSEELTSLLVVHWGGLLLDLSAGFLL---- CONSENSUS/80% .WhtGhuh.h....hphhhs..th.....hh......hhhhphhshhhph.hshhl.... CONSENSUS/65% .WlpGhuh.h...shcahhsshph.....hl.pp.s.lhlhpassllh-lshsalL.... CONSENSUS/50% .WlsGaAMpY..hSpcWlhuPhch.....lLsccsssLlllsWsGLllDLusuFLL.... 586241/56-315 FFDVSRSIGLFFVSYFHCMNSQLFSIGMFSYVMLASSPLFCSPEW CONSENSUS/80% h.t..R.hshhhh.hhHhh.t.hhtlshFshhhlst..lahssph CONSENSUS/65% hhcthRsluhhhshhhHhh.uhhhslGhFsalMluusslFhsspa CONSENSUS/50% ahctoRslullhsssFHshsupLFuIGMFPaVMLuussLFhoscW
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |