103690.all5112_from_27_to_145TSDGTTNTTVN------PSSNNFQIINGTARGN--NLFHSFS--------NFS------- CONSENSUS/80% ..s.s..s...sst....hs.....tsst.s.....h.pp...................t CONSENSUS/65% ssshshsshsssst....tsh.pthssspts....thhsssh.................s CONSENSUS/50% ususPssshsssus....tsphsphssusps....plhssush.......pap.....hs 103690.all5112_from_27_to_145LPKDTS---ATFDLT------NTPNITNIFSR--VTGGNISH-----IDGLIE-----TI CONSENSUS/80% ..ts.h...s.ht..........ttsthhlsc..hs.sp.S......l.G.lp....... CONSENSUS/65% .hsuth...sphp.........sssspslLNc..lsssssSp.....ltGtlp....... CONSENSUS/50% lsuGps...ssFs.........ssuuslILNR..VsusssSp.....IpGplc....... 103690.all5112_from_27_to_145K--SNNPVSLFLMNPAGIVFGSNASLNIGGSFVGTTANSLKFA----------------- CONSENSUS/80% .....tst.lhh.ssshhh.Gtsh...sst.hlsoshs..p.t CONSENSUS/65% .....sss.lhh.ssshhl.Gsss.s.sss.hlsostshhsts CONSENSUS/50% .....ssshValsNsuGllaGsuuplsluu.hluTotslhcss 103690.all5112_from_27_to_145---------------- CONSENSUS/80% CONSENSUS/65% CONSENSUS/50%
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |