HV07_MOUSE/1-11 PGAELVKP--GASVKLSCKASGYT-------------FTSYWMHWVKQ----RPGRGLEW CONSENSUS/80% .....h....Gpph.l.C.h.t....................h.ahh............. CONSENSUS/65% stshhst...GpslplpCpsps................ststhpWhpp..........p. CONSENSUS/50% ssshslpt..GpslsLsCpssu...............ssssplpWh+p........tsph HV07_MOUSE/1-11 IGRIDPNSGGTKYN---------EKFKSKATLTVDKPS----------------STAYMQ CONSENSUS/80% ..............................thth........................l. CONSENSUS/65% l...........................ttphphpt...................thtLp CONSENSUS/50% lh..........................ss+hslsppt................tsssLp HV07_MOUSE/1-11 LSSLTSEDS-----AVYYCARY------------DYYGSSYFDYWG--QGTTLTVS CONSENSUS/80% l.thp.tct.....u.YhC.h........................t....h.l.l. CONSENSUS/65% lpslp.pDs.....GhYhCtsp................st.tthts...ssplpV. CONSENSUS/50% IsslptsDs.....GsYpCpss................sstsstpu...sspLpVp
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |