7739.JGI124013_from_1747_to_1827CTQLRS-CAECVANNRV------DCDTDCGSTTTSF---MDEL--------------PQG CONSENSUS/80% Ctthpp.ClpC.hatpG.htt..pCtttCt....ph...spth................. CONSENSUS/65% Cpph+s.ClpCptapsG.htp..pCsppCp...hpl...Vcph...............tp CONSENSUS/50% Cspp+s.CVECpsFsoGshpc..sCscpCs...hslhh.V-cl...............ps 7739.JGI124013_from_1747_to_1827PLPA--------GKWKLC-EFVDP--EKNLPFVFSYD------PDSDNIVL---HFR--- CONSENSUS/80% .................C.p..s...ppsChhha.h......t.tsp..lh...s.p... CONSENSUS/65% tp.............ttC.phpc...pcsChhtFpht.....stpsphhlh...l.c... CONSENSUS/50% spss...........ppC.ph+D...-D-ChhpFsap....psssscshlp...Vpc... 7739.JGI124013_from_1747_to_1827--------QVEV---MPSS CONSENSUS/80% ........p.tC..s..s. CONSENSUS/65% ........ph-C..stsss CONSENSUS/50% ........cc-C..PpsPs
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |