5306.JGI63156_from_8_to_353/1-277LRDALLSALATL---PGTREFHVHVLVSSPRKHT----GLFP----YAHPRPR------- CONSENSUS/80% ltthh.p.........tt.th.lhhhts..p.h......h........tp.......... CONSENSUS/65% lpphltp.h......spstplsl+hlsssppts......ht......htpphtt.....s CONSENSUS/50% LschLpcpl......ssssclslRtloosccpst....plss....shpccappp...hs 5306.JGI63156_from_8_to_353/1-277----VYLQEVLVLLSE------------------QAGPDAPRQLV-SAVE-VSAYNVPTT CONSENSUS/80% ...hsat.phhhhhp....................pt....-hhh.auh..s..Y.t... CONSENSUS/65% ...hsapp+thhsapt..................h-ss...-lhh.Fuhh.lpEYtst.. CONSENSUS/50% pt.hsYcs+slhsFpc..................l-Gs...-Vll.Fula.VpEYssss. 5306.JGI63156_from_8_to_353/1-277----------SCGILYVSKVDSTG------------------------------------ CONSENSUS/80% ..........tpphhhlphhDos.ahp................................. CONSENSUS/65% ..........tpphlhlshlDSltahp................................. CONSENSUS/50% ..........spsplaluYLDSVsahc................................. 5306.JGI63156_from_8_to_353/1-277-------QG----------MFPSPTSTLVKALLSY--YADPATRPIR----------VDT CONSENSUS/80% ...................t.ts...lhppl..sa..hphhtphsht...........sh CONSENSUS/65% ..................tth+s...lacpllhuY..hpahtphGap..........psa CONSENSUS/50% .................stshRot..lY+cIlluY..lcYscphGap..........pu+ 5306.JGI63156_from_8_to_353/1-277L-----------------WIQLFARAQNQYLFPNSADHPG------KKPLSDVKLCAWWR CONSENSUS/80% h.................hss...pup.pYla.hps..........pth.p.ptL.tWa. CONSENSUS/65% l.................aussPtcus.sYlF.s+Ppp........p+h.sscpLhpWYt CONSENSUS/50% l.................WAsPPs+G-.DYlFssHPcs........Q+hhcsc+LlcWYp 5306.JGI63156_from_8_to_353/1-277RVLGEV------------------------------------AAGLKSKERDATIRAYYL CONSENSUS/80% phlp.h....................................h.t....t...thpph.. CONSENSUS/65% phlcps....................................h.t....t.hhphcshhp CONSENSUS/50% +hL-cu....................................hss....slltch+sahc 5306.JGI63156_from_8_to_353/1-277------------LPGYNAIRSPERK--------RSRTLSRTESKEKALLAPEETPKAAKE CONSENSUS/80% ....................t.tpt.....................lsha.ss.hsthhp CONSENSUS/65% ...................pthppp...............h.shtplPhFssshhsphhc CONSENSUS/50% ..................hpspscs...............hhsssclPhFcsDhWsphl- 5306.JGI63156_from_8_to_353/1-277HKEHK---------E-------------------------HKPDGELAKC-STD------ CONSENSUS/80% ph..p.......................................tt..t........... CONSENSUS/65% ch.pc.......................................sp.pph.php...... CONSENSUS/50% -lhcEh....................................ttGchcsspshc...... 5306.JGI63156_from_8_to_353/1-277------------------------------EFWERMSFRQECVAG---AVTGFFTIGIAS CONSENSUS/80% ...............................h.p.h..t..t.ht...p..hhl.h.... CONSENSUS/65% ..............................phhpcl.hpphppht...cshhhltLt.s. CONSENSUS/50% ..............................pFhccL.tcphpppu...cssaaIcLstss 5306.JGI63156_from_8_to_353/1-277PASDTSS CONSENSUS/80% ....... CONSENSUS/65% .tt.t.. CONSENSUS/50% sssssss
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |