IOV7_CHICK/1-59 NCSLYASGIGKDGTSWVACPRN-------------------LKPVCGTDGSTYSNECGIC CONSENSUS/80% .C................Cs........ ...t.VCGo-s.TYss.C.hp CONSENSUS/65% tC................Cspt...... ..hpPVCGoDGhTYsNpCtlp CONSENSUS/50% sCsp.............sCspp...... ..hsPVCGSDGpTYuNcCpLp IOV7_CHICK/1-59 LYNRE---------HGANVEKEYDGEC CONSENSUS/80% htth...... ..tt.tlth.htG.C CONSENSUS/65% ttspp..... ..pttslpltppGtC CONSENSUS/50% sssCp..... ..ppsslplp+cGsC
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |