FA12_BOVIN/1-8 ASCYDDRDRGLSYRGMAGTTLSGAPCQSWAS--EATYWNVTAEQVLNW---GLGDHAFCR CONSENSUS/80% tpCh.s..pG.tYcGphshT.sGh.C..Wst..st.h.........t......htcNaCR CONSENSUS/65% tpChts..sGpsYRGshspTtoGhtCptWssphschtph..stphssh.....hpcNYCR CONSENSUS/50% pcChsG..sGcsYRGTsusTpSGtsCQpWsuptPHp+ph.sssphPsts....LccNYCR FA12_BOVIN/1-8 ---NPDN--DTRPWCFI-WKGDRLS-WNYCRLA-PCQA CONSENSUS/80% ...NPss..tttPWCas..hs.th..hphCtl...Ctt CONSENSUS/65% ...NPDu..pptPWCYT..tssphp.h-aCsl..pCps CONSENSUS/50% ...NPDGp.scuPWCYT..s-sslc.aEYCsls.pCss
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |