370552.MGAS10270_Spy0921_from_45_to_418TFFDK--SLSHGVPSLILMYSSL-YKVTKDER-------YLTFSN--IYVEKLVD----- CONSENSUS/80% ...t...slhtG.sGluhhhh.h..t..tt..........ht.s...thlpthht..... CONSENSUS/65% tshs...sLYsGhsGlAhhhhth.tphstttt.......hhptuh..phlppshp..... CONSENSUS/50% sstss..oLYsGsuGlALhhhcL.ucsssspp.......hlppAp..shlcsshs..... 370552.MGAS10270_Spy0921_from_45_to_418--IISRDGIESPSL----YAGT-----AGIALAIK-----EASI---SGKY-----YPKL CONSENSUS/80% .......t..thsh....h.G......suhhhhht.....hh.t...hhtt......tth CONSENSUS/65% ....t.tsttthuh....htGh.....uGlhhshs.....hhtp...hhtp......pph CONSENSUS/50% ....tsssspssoh....hsGs.....uGlhalhu.....hlup...ths-...t.hsch 370552.MGAS10270_Spy0921_from_45_to_418LSSLNCLLKEQ----------IKDKLVV----SFSNIEKGIIEPY--DYDMVN------- CONSENSUS/80% htth.thh..h......................................-lh........ CONSENSUS/65% lpphtphh.th...........t...tt...................t.-llh....... CONSENSUS/50% lschpphtsps..........spsphst...................shDlls....... 370552.MGAS10270_Spy0921_from_45_to_418----------------------------GFSGITN------YLLLEQEFFSVEL------ CONSENSUS/80% ............................GhsGhhhh.....hh.h.t.h........... CONSENSUS/65% ............................GtuGhlhs.....hLhltpthst......... CONSENSUS/50% ............................GpAGhlhu.....LLtlspphss......... 370552.MGAS10270_Spy0921_from_45_to_418----------------------NQIGNYLLK-YIETIL----------NKVTNCSEDREA CONSENSUS/80% ......................tthht.hht..sp.h....................h.t CONSENSUS/65% ......................pplhphhlp.sucplt............pttts.hhht CONSENSUS/50% ......................ssllstllc.sGcpLs..........tppspss.hhhs 370552.MGAS10270_Spy0921_from_45_to_418EFD-----------------------LGIAHGITGPMLILAKLKSEKILSVE-------- CONSENSUS/80% aht.......................hGhuHGhsGhhhhLhth..hh............. CONSENSUS/65% Whs....................p.hhGhAHGhuGIhhhLhphhthhtt.t......... CONSENSUS/50% Was....................pthlGhAHGlAGIhasLhpssptsssss......... 370552.MGAS10270_Spy0921_from_45_to_418-----------------------VGDILNKAIN---------LMFLFRRD-DKL------ CONSENSUS/80% .........................p.hht.ht.........h..th....tts...... CONSENSUS/65% .......................hhptlptsls.........ahhpht...sss...... CONSENSUS/50% .......................htcslcpulc.........ahpshpps.sus...... 370552.MGAS10270_Spy0921_from_45_to_418--WPGKI---------YTSNILD-LDLNYLPTRMAWCYGAPGTAVA---LFKMCQL---- CONSENSUS/80% ..a................tt.t..........stWCaGssGhhh....hhhhh.h.... CONSENSUS/65% ..aPshh...........tspts.........hspWC+GusGlshh...hhpuh.h.... CONSENSUS/50% ..aPsph..........tsspsc........hhlpWCHGAPGluhs...Lt+Aspl.... 370552.MGAS10270_Spy0921_from_45_to_418---IDLNFIDDINESLIAQMRSSD-------KNVYSLTMCHGLAGVTFIYDLIGKNYSSE CONSENSUS/80% ...htp.th.t.h..shp.hhp.s.......hts.s..lCHG.hG.h.hhh.hhp.htp. CONSENSUS/65% ...hpctthhpth.tshpshhppu......hhps.u..lCHGhuGps.hhhhhhphstp. CONSENSUS/50% ...hs-pphppsstpsucslhpcGh.....lt+ssG..LCHGsAGsutlhLtltctTscs 370552.MGAS10270_Spy0921_from_45_to_418R------LTRFAEEL----RQQIITSFSTTKVFGYTDREKFGEIEVELESI-----GILQ CONSENSUS/80% .......h..hs.th....ht.hht.h.t............t...ps.........uhhp CONSENSUS/65% p......hhhputph....sphhhsphtpp...........psspps.........uLhp CONSENSUS/50% c......ahtcApch....ushllsptppp..........scss-sPh........uLh- 370552.MGAS10270_Spy0921_from_45_to_418GVSGIVLFLLNP-----YSDEELLWQRIFI CONSENSUS/80% GhuGhhhhhhph.....htst...hs.h.h CONSENSUS/65% GhAGhshhLhch.....hpsp..thsth.l CONSENSUS/50% GhAGluhtLlcl.....tsPspspaPuhhL
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |