YL_DROME/1-38 RCDAG---QFQCR----------DGG--CILQAK--MCD---GRGDCK-------DSSDE CONSENSUS/80% .C.......atCt..........stt..Cl..th..hCD...s..DC........DtsDE CONSENSUS/65% pCsst...pFpCt..........ssp..CIstph..hCD...GpsDCt.......DuSDE CONSENSUS/50% sCsss...pFpCs..........sGc..CIspsh..hCD...GcsDCs.......DGSDE YL_DROME/1-38 ------LDCDY CONSENSUS/80% .......tC.. CONSENSUS/65% ......ptCst CONSENSUS/50% ......psCsp
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |