281687.CJA21980_from_1_to_104ME--DKHIGS-VISADTADGCV-YQGKLTTLD---RNNGNITLAS--------------- CONSENSUS/80% hs....alGp.hlol.spttht.Y.Ghl.pls....pptslsLtp............... CONSENSUS/65% Mu...paIGs.hISlhopssl+.YpGhLtsls...spcuTlsLpp............... CONSENSUS/50% Mu..psaIGS.pISLIS+s-lR.YpGlLpsID...sp-uTluLps............... 281687.CJA21980_from_1_to_104--------VCKWVPRHPKK-------PTKSFRDGLPL-FRCVTISAR--EITKLRVIRSP CONSENSUS/80% ........sh..Ghct..............h.s.....ht.lhhpup..Dlpclpl.p.. CONSENSUS/65% ........VhsaGoEsR..........t..l.stppl.aphlhF+us..DIc-Lplhc.. CONSENSUS/50% ........VRsaGTEsR.........sspplsPsspl.Y-aIlFRGo..DIKDLpVl-.. 281687.CJA21980_from_1_to_104G----GSAQTSTTTSSFTSPPASPPPPP CONSENSUS/80% ....................ss..t... CONSENSUS/65% .............sh.p..ssAhhpstt CONSENSUS/50% ......sstssssshss..cPAIlssss
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |