67593.JGI127074_from_582_to_673---TFKEM--LGKVIRAP------TWKTQVTPNGRHSLECDPNK---------------- CONSENSUS/80% ....sp.l..hp+h..................stc.shpttthh................ CONSENSUS/65% ...hsctl..hp+hs................tsp+tohppspah................ CONSENSUS/50% ...hu+pl..lc+ls...............tsssRtolcpssYh................ 67593.JGI127074_from_582_to_673------FHFTMN------------------NDELVFAAITAKDYPI--RLAFQMISAV-- CONSENSUS/80% ......hphh.p...................pslshhslsppphst..phsathLpcl.. CONSENSUS/65% ......hHhhhp...................sslshlsls-ppasp..phuFshLpcl.. CONSENSUS/50% ......aHalsc...................sGlsalslsDcsYP+..+lAFsaLs-l.. 67593.JGI127074_from_582_to_673---------------QQEVV--PKFG------------SKALT---CRENGLDKDC-AKL CONSENSUS/80% ................pcF...tths................s.....shsh.p...sth CONSENSUS/65% ...............tpcFh..ppast............htts...s.shuh.ph..sph CONSENSUS/50% ...............pc-Ft..spast...........ppsss...spsauhsch..ssh
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |