YDF3_SCHPO/1-23 QRKVKGSLNKMT----LEKFDKISDQILEIAMQSRKEN-----DGRTLKQVIQLTFEKAT CONSENSUS/80% .thhpthhpcls.....t.hp..h.th.t...t..............ht.lhp.hhph.. CONSENSUS/65% .cplpslhscls.....pthpphhpplhphhhp............thhptllphlhptsh CONSENSUS/50% p+plpulls+Ls....ssslcslhcpltphhhsp..........tptpppllctlhppst YDF3_SCHPO/1-23 DEP-------NFSNMYARFARKMMDSIDDSIRDEGVLDKNNQPVRGGLLFRKYLLSRCQE CONSENSUS/80% ..........t.h.hhstlh.hht.h......................phht.hlphh.t CONSENSUS/65% tp........phhshhupLsshlptths....................phsphllpphhp CONSENSUS/50% tps.......shlssaApLsusLssphs....................cFsppLlsphpc YDF3_SCHPO/1-23 DFERGWKANLPSGKAG----------------EAEIMSDEYYVAAAIKRRGLGLVRFIGE CONSENSUS/80% thpt.......................................p....tphht.hthhs. CONSENSUS/65% phpp.....................................t.pttphpphhshlpFlu- CONSENSUS/50% pFcp...................................hpppcpsspp+plssl+FluE YDF3_SCHPO/1-23 LFKLSMLSEK-----IMHECIKRLLGNVTD-----------------------------P CONSENSUS/80% lh..thhp........hhthh..hh................................... CONSENSUS/65% Lhphphlptt......hhphlhthlt.hpp.............................. CONSENSUS/50% Lashpllssp.....hlhssltpllpshsp.............................. YDF3_SCHPO/1-23 EEEEIESLCRLLMTVGVNID---------ATEKGHAAMDVYVLRMETITKIP-------- CONSENSUS/80% ...tlthhh.hh..hG..h..................hpthh..hpthh........... CONSENSUS/65% ...plchlhthLppsGt.lt...........tpsppthpphhpthpphh.tt........ CONSENSUS/50% p.pslcslsplLpssGppLp...........ppsspplcpllsplpshhpps........ YDF3_SCHPO/1-23 --------------------------NLPSRIKFMLMDVMDSRKNG CONSENSUS/80% ..............................phphhh..hh.hht.t CONSENSUS/65% ..........................phs.phchhlpphhplppsp CONSENSUS/50% ..........................phss+lcahlpslhpl+psc
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |