Q9FF96 FEYCTKNGH----DYGSISQIWVSPSDG----------PQENPTITIHLF--GSASKDIS CONSENSUS/80% hp.Cs..........h.h.tlplpsss.............hsp.hphpht..h..tppht CONSENSUS/65% ap.Cs.........hhplpplplsssss...........hcupshslphs..htsppplp CONSENSUS/50% apsCs........shsplppVsloPsss...........h+Gpslolsls..hsssc-ls Q9FF96 AG-TLVYVTYRSG-----DFTGLL---------KTYDLCDVSA----------------- CONSENSUS/80% th..hh.lth.h.......l.h..............shCp.................... CONSENSUS/65% ph..thslphphs......lsh.t..........pt-hCc.................... CONSENSUS/50% pu..plslplphss...htlslss.........tppDlCctht................. Q9FF96 ----CNPEYVIEAGTDFELTLS-----DVLYVGFDEEI-----KYSVSLREKTSE---EK CONSENSUS/80% ....Cs....h..Gp...h..........h...hP.h......ph.h.hthhs....... CONSENSUS/65% ....CP....lptGchhhhp.........lst.hP.s......phplphplhst...... CONSENSUS/50% ..htCP....lcsG-phphpssh.....slPsphPsG......cYplphclhsp...... Q9FF96 NPIIKMCVDFKV--- CONSENSUS/80% ptt.hhCh.h.h... CONSENSUS/65% sptplsChphsh... CONSENSUS/50% ccpplsClshss...
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |