227882.SAV2981_from_180_to_400QHGTAVVTLAALRN-----AAKLTG-RT--------------LGELRAVISGAGAAGVAI CONSENSUS/80% .pGTAhlshAulhs.....uhcl.s.................htp.pllh.GAGuAuhuh CONSENSUS/65% .pGTAhVshAulls.....Ahclss.................lp-h+lVh.GAGuAuluh CONSENSUS/50% QHGTAIVslAuLlN.....AL+lsG.c...............lp-h+lVlsGAGAAGlAl 227882.SAV2981_from_180_to_400AKFLLAAGLG--------------DVAVADRK-GVVSKDR-DDLTP------VKRELAEI CONSENSUS/80% hphlhthh...............tplhhhDpp.Gllhpt..............pt.hAt. CONSENSUS/65% schlhthhht............hpplhhsDpp.Gllhpsp.........hs.hppthApt CONSENSUS/50% AcLLlstGsp............tcsIhllDp+.GllpcsRtp.......hsthKppaApp 227882.SAV2981_from_180_to_400TN-KA--------GLSGSLESALA--GADVFIG-----VSG-----GTVPEPAVASM--- CONSENSUS/80% tp...............tL.-slt..tsslhlG.....hSs.....shhs.chlptM... CONSENSUS/65% sst.............tsLt-slc..tsslhlG.....lSss....shhsp-hlcpM... CONSENSUS/50% osp.t...........toLp-slc..GADVFIG.....lSus....GllTcEhV+sM... 227882.SAV2981_from_180_to_400------AEGAFVFAMANPNPEVHP---EIAHKYA-------------------------- CONSENSUS/80% ......stpPllhshuNPssch.s...phhp.s........................... CONSENSUS/65% ......sccPIlFAluNPssclps..tcthchst.......................... CONSENSUS/50% ......sccPIIFALANPsPEIcPp.scsh+sss.......................... 227882.SAV2981_from_180_to_400-----------SVVATGRSDFP----------------NQINNVLAFPGIFAGALQVRAS CONSENSUS/80% ...........tlhuTGps..P................sQhNNshhFPhlhhGslsstAp CONSENSUS/65% ...........sllATGpsshP................sQsNNsLsFPGlhhGuLsspAp CONSENSUS/50% ...........AllATGRSDaP................NQlNNVLsFPGIFRGALDs+Ap 227882.SAV2981_from_180_to_400RITEGMKIAAADALADVVGD-----------------DLAADYVIPSPFD---ERVAPAV CONSENSUS/80% tlsptMhhAAspulut.........................thllP...p....pl..tl CONSENSUS/65% pIs-cMhlAAucAlAp.......................stshllPs.h-....cl..tl CONSENSUS/50% cIo--MplAAAcAlAslstt.........h.....p.thuscallPsshD...p+VuspV 227882.SAV2981_from_180_to_400T---AAVAAAAR CONSENSUS/80% u....sVtptAh CONSENSUS/65% A...hAVupsAh CONSENSUS/50% A...sAVAcAAh
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |