178306.PAE0875_from_6_to_172/1WILSVGNELLIGR-----------------------------VVNTNA-AWLASKLTFLG CONSENSUS/80% tllshuschh.................................h.sps..hl.thltthG CONSENSUS/65% ullssGsElhtst..............................h.ssst.hltthlpphG CONSENSUS/50% ullosGDEllpsp.............................tlp-sssshLsstLpptG 178306.PAE0875_from_6_to_172/1YSVRRIVVVP----------------------------DEENDIVEAFREAINRA----- CONSENSUS/80% ......................................Dp.t.lhtth.thh........ CONSENSUS/65% ......................................Dchptlttslpptht....... CONSENSUS/50% h....tshhh............................D-hcplppslpcuhst...... 178306.PAE0875_from_6_to_172/1----------------------DVVILTGGLG---PTPDDITNLAFCKALG--VEAVVND CONSENSUS/80% ......................phllhsGGhu....s.tDhs.psh.thht......... CONSENSUS/65% .....................h-lllsoGGsu...sstcDhshpsltphhs......... CONSENSUS/50% .....................sDlllToGGsG...succDlTt-ultphhs......... 178306.PAE0875_from_6_to_172/1EALKMVR-------GKYESRG--------------YALTPERIKMAMMPPGA-------- CONSENSUS/80% .........................................hh..hhh.t.......... CONSENSUS/65% .......................................h.hhthshpPtth........ CONSENSUS/50% ......................................thhtpthAh+Pust........ 178306.PAE0875_from_6_to_172/1--------TPLPNPVGTAPGILYESGG--------------------------------- CONSENSUS/80% ...............t.h.......................................... CONSENSUS/65% ...............sthssh....................................... CONSENSUS/50% .............hhusssGhh...................................... 178306.PAE0875_from_6_to_172/1------KL-VVLLPGV--PKEMEAIFENHVEPLLKS-- CONSENSUS/80% .........hh.lPG...s.thh.hh...hh..h... CONSENSUS/65% .........lhsLPGs..Psushhsh..hhh..hht. CONSENSUS/50% .......thlhsLPGs..Psustsshtpllltsllp.
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |