351160.RCIX2378_from_3_to_57LKLVSTICPY-CG---CGCGINLVEK---------------------DGKVVGVEPWKR- CONSENSUS/80% .p.h.shC.h.Cs...stCsh.h..........................thhthtst.t. CONSENSUS/65% hphshosCsh.Cu...ssCulhhth........................plhplpus.pp CONSENSUS/50% tcpsposCsa.Cu...sGCGlplpspt.....................t+llclcGsscp 351160.RCIX2378_from_3_to_57--HPVNE-G----------------------------------KLCPKGNFA---HEFIH CONSENSUS/80% ...shs..t..................................hhC.+Gh.....hphh. CONSENSUS/65% ...shs.pG..................................tlCsKGtt....hphht CONSENSUS/50% ...PsN.pG..................................pLCsKGps....hchlp 351160.RCIX2378_from_3_to_57R CONSENSUS/80% t CONSENSUS/65% s CONSENSUS/50% s
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |