290318.Cvib_1624_from_420_to_5VAEVKIWQLHNKYLICQ----IKTG-------------------LMIIDQHVAHERVLYE CONSENSUS/80% ....hhsphtttallht...........................lhllD.+succ+lhhc CONSENSUS/65% ....hluQlptpallsp...........................LhllDQHAAcERlhaE CONSENSUS/50% s.htsluQlcssYIlsp....stps...................LhllDQHAAHERltaE 290318.Cvib_1624_from_420_to_5R------AVDVMETSVPN------------------SQQLLFPQKVELRPWDWEIFEEIR CONSENSUS/80% .......h.t...........................p.lh.s..hths..p..hh.p.. CONSENSUS/65% t......hhpthtt......................tQ.LLhPhhlplstt-hthltp.. CONSENSUS/50% p......lppthspt.....................sQsLLhPlslcLoss-tthlpct. 290318.Cvib_1624_from_420_to_5----DDLYRLGFNLSLFGSRT--------------VMIEGVPQD---VRPGSEVSILQDM CONSENSUS/80% ....t.htphGh.hp..t.................hhlpthP.....htt.........h CONSENSUS/65% ....p.LpphGhplp.hu.t...............hhlpthPsh...htptpht...t.l CONSENSUS/50% ....-pLpclGlcl-shGsp...............ltl+ulPsh...Lspssspthhppl 290318.Cvib_1624_from_420_to_5IAEYSENA---------------------------------------SKLKLEKRDNLAK CONSENSUS/80% hp.h.p...............................................hhtthht CONSENSUS/65% hphhtp.t..........................................h.phhpplhs CONSENSUS/50% l-hlpctt.......................................t..htpthccllu 290318.Cvib_1624_from_420_to_5SYSCRNAIMTGQKL CONSENSUS/80% .hus+tulhhsp.h CONSENSUS/65% phAC+sul+ssphL CONSENSUS/50% ohAC+uul+uscpL
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |