448385.sce6728_from_83_to_233EVSVLENITFY--------------------------DGYAETVDEPIPPGVIRHNNSLV CONSENSUS/80% hl.VFpp..hp........................stphhhtpl.lP...th.p.tt... CONSENSUS/65% slsVFsppphp........................GscshhtpVpLP...phtpass... CONSENSUS/50% lVsVFscsslp........................GscGllcsVsLP...-hpcass... 448385.sce6728_from_83_to_233ATRLTGELLAKVQTTLKVRVVV-GALCDNY-DRLGSVNLALVPKG--------------- CONSENSUS/80% .........l.Lchshts.Gpt.......a.D+shplalhsp.................. CONSENSUS/65% .........lpL-hslussGsp.s..Cs.W.D+osplFVsss.................. CONSENSUS/50% .........VpLDsoLuCsGcR.DtsCstW.DHTlpLFVCCc.................. 448385.sce6728_from_83_to_233---------------------------------AQTYVPGQVDRIEVARFVTPF------ CONSENSUS/80% .................................ttp.hss.....ElhRahTsa...... CONSENSUS/65% .................................tps.hss.....ELuRahTsF...... CONSENSUS/50% .................................sssslCs....pELGRWlTPF...... 448385.sce6728_from_83_to_233-----MDMNKQPKTVPYEW--------EASNLVPILKDPDLLAEHDFWFELGI--FGV-P CONSENSUS/80% ........p+t...hsp.W.s......slosLhshh.pst......s.hshhhssWs..s CONSENSUS/65% ........+R+...hG+.WlT......-losLlPlL.pup......sphshphssWsh.s CONSENSUS/50% ........RRR...lG+.WLT......DITPLLPLL.cuct.....CsFTl+TssWut.P 448385.sce6728_from_83_to_233YAANDEVPG CONSENSUS/80% ahsshplch CONSENSUS/65% ahsoLslRh CONSENSUS/50% WssSLsLRa
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |